# Index of software **URL:** \ **Category:** Software\ **Created:** [March 7, 2023, 6:04pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142 "2023-03-07T18:04:47Z")\ **Posts on this page:** 20\ **Page:** 1
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [March 7, 2023, 6:04pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/1 "2023-03-07T18:04:47Z")
I love a nice curated index. wiki’s list of PIC software. Curlie. awesome-\* lists. Here are software that I’ve come across in my travels, and my experiences. > [!success] > It would be cleaner if I used my redmine db as the source of truth for this page. ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [March 7, 2023, 6:09pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/2 "2023-03-07T18:09:05Z")
# Scientific data management / LIMS / reproducibility scripts ### Sumatra - used ### Signac [https://github.com/glotzerlab/signac](https://github.com/glotzerlab/signac) ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [March 7, 2023, 6:09pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/3 "2023-03-07T18:09:09Z")
# Writing #### Google Drive I’ve always ended up doing most of my long-form writing in Google Drive - it’s just what I’ve used since growing up. Recently they’ve added some features that make it behave like an outliner. ![image](http://forum.0xdbfb7.com/uploads/default/original/1X/0a543560c9e17ade6953f3703512543203620887.png) As of this date, the mechanism to combine and export the whole document, including all tabs, is in the [development build](https://www.googlecloudcommunity.com/gc/Workspace-Q-A/Google-Docs-Tabs-to-PDF/m-p/804171/highlight/true#M21445) only. #### LibreOffice LibreOffice has also added a slightly more limited subset of these features, using the Navigator view and this setting: ![image](http://forum.0xdbfb7.com/uploads/default/original/1X/a4ee5cfe206a608ff27e36b0d6315379a924189b.png) ![image](http://forum.0xdbfb7.com/uploads/default/original/1X/b4df80f4cfad9d322e24c758731a81c1e193c33e.png) #### Scrivener Proprietary Windows/OSX-only outliner; no Linux version #### Manuskript [https://www.theologeek.ch/manuskript/](https://www.theologeek.ch/manuskript/) # Presentations > Created with {Remark.js} using {Markdown} + {MathJax} [https://selipot.github.io/talks/lecture4.pdf](https://selipot.github.io/talks/lecture4.pdf) need to try this out LaTex Beamer Reveal.js - nice feature here over pdf is the speaker notes can be shown on the right downside is lack of archivability ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [April 18, 2023, 5:39pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/4 "2023-04-18T17:39:53Z")
# Git / GitHub [Myrepos](https://myrepos.branchable.com/install/). Saves one from having to git pull changes from remote. Helpful if you have a lot of repos to keep updated. `mr register` each repo and then `alias upd="cd && mr update && cd -" ` ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [May 19, 2023, 8:36pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/5 "2023-05-19T20:36:40Z")
> **[SCons: A software construction tool](https://www.scons.org/)** > > SCons: A software construction tool spack easybuild lmod mamba conda ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [June 8, 2023, 6:21am UTC](http://forum.0xdbfb7.com/t/index-of-software/142/6 "2023-06-08T06:21:07Z")
Writing and editing - [https://ipe.otfried.org/](https://ipe.otfried.org/) ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [June 9, 2023, 4:06am UTC](http://forum.0xdbfb7.com/t/index-of-software/142/7 "2023-06-09T04:06:29Z")
# Staging ground [https://www.fluka.org/fluka.php?id=secured\_introc](https://www.fluka.org/fluka.php?id=secured_introc) [https://mesonbuild.com/](https://mesonbuild.com/) [https://docs.wagtail.org/en/stable/](https://docs.wagtail.org/en/stable/) [https://github.com/davidthings/hdelk](https://github.com/davidthings/hdelk) ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [July 16, 2023, 8:34pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/8 "2023-07-16T20:34:33Z")
# Working with HDF5 - Vitables - PyMca - h5tree - h5view ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [November 30, 2023, 5:00pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/9 "2023-11-30T17:00:10Z")
> **[Welcome to Dynalist - Dynalist](https://dynalist.io/demo/zGF4ozIIEEzkbFUKE-8Z5xgQ)** > > Dynalist lets you organize your ideas and tasks in simple lists. It's powerful, yet easy to use. Try the live demo now, no need to sign up. ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [December 7, 2023, 5:33pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/10 "2023-12-07T17:33:50Z")
# Markdown VMD npm install -g vmd KDevelop Sublime Text Spyder leo-editor LeoInteg [https://marketplace.visualstudio.com/items?itemName=boltex.leointeg](https://marketplace.visualstudio.com/items?itemName=boltex.leointeg) [https://logseq.com/](https://logseq.com/) # Markdown Literate programming [https://github.com/vijithassar/lit](https://github.com/vijithassar/lit) ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [April 20, 2024, 4:07pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/11 "2024-04-20T16:07:12Z")
# Podcasts VLC has some basic RSS podcast features. [https://github.com/m3nu/upodder](https://github.com/m3nu/upodder) - basic batch downloader tool ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [May 2, 2024, 4:17pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/12 "2024-05-02T16:17:51Z")
# Simulation ans numerical codes ## X-ray - SRW - XMI-MSIM - msim - XRMC - Sim-xrf ## Charged Particles [https://traceon.org/](https://traceon.org/) - never used but looks interesting, thanks _@Chrunchi_ Kassiopeia - never used but looks interesting, thanks @manshiro - SMILEI XGC [https://xgc.pppl.gov/html/index.html](https://xgc.pppl.gov/html/index.html) used by iter ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [May 5, 2024, 9:57pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/13 "2024-05-05T21:57:32Z")
> **[Introducing Experimental Form Templates](https://meta.discourse.org/t/introducing-experimental-form-templates/278631)** > > Hello, Discourse Meta Community! We are excited to introduce a new experimental feature, form templates. With it, you can enforce a structured form with data validation as part of the topic creation flow. Enabling the feature The feature is... ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [May 5, 2024, 9:58pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/14 "2024-05-05T21:58:01Z")
go through programs/ folder ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [May 9, 2024, 8:55pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/15 "2024-05-09T20:55:47Z")
# Experiment tracking / reproducible scripts - Sumatra - Sacred ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [October 25, 2024, 5:09am UTC](http://forum.0xdbfb7.com/t/index-of-software/142/16 "2024-10-25T05:09:00Z")
# Project management / time management ## Rememberthemilk # Redmine [https://redminedemo.saas-secure.com/projects/redmine-demo-project/issues](https://redminedemo.saas-secure.com/projects/redmine-demo-project/issues) [https://github.com/docker-library/docs/tree/master/redmine](https://github.com/docker-library/docs/tree/master/redmine) see demo no batteries-included support for repeating tasks Open source # [Leantime.io](http://Leantime.io) Lots of ways of tagging new tasks. Slow AF user interface. # Notion Apparently folks use this for task tracking. Powerful “paradigm” that I haven’t wrapped my head around properly yet. way beyond CRUD. Obsidian Tasks [https://publish.obsidian.md/tasks/Getting+Started/Recurring+Tasks](https://publish.obsidian.md/tasks/Getting+Started/Recurring+Tasks) # Structured.app well-designed linear to-do-list app. Used this for a little while but it didn’t quite work for me. Android app is still WIP but functional. ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [November 7, 2024, 3:44am UTC](http://forum.0xdbfb7.com/t/index-of-software/142/17 "2024-11-07T03:44:37Z")
Math insect [https://hurmet.org/sample](https://hurmet.org/sample) ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [December 8, 2024, 2:56am UTC](http://forum.0xdbfb7.com/t/index-of-software/142/18 "2024-12-08T02:56:48Z")
Home recipe management # PlanToEat commercial, $50/year. used this for a while. have some qualms with the UX. # Grocy open-source, selfhosted # Mealie Open-source, selfhosted. Switched from Mealie to Grocy. ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [February 19, 2025, 9:35pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/19 "2025-02-19T21:35:16Z")
# Scientific graphics MathGL My go-to if C/C++ is the order of the day. High performance. Datoviz Haven’t used this. VisPy ---
**Author:** ![0xDBFB7](http://forum.0xdbfb7.com/user_avatar/forum.0xdbfb7.com/0xdbfb7/32/7_2.png) [@0xDBFB7](http://forum.0xdbfb7.com/u/0xDBFB7)\ **Post date:** [March 14, 2025, 7:21pm UTC](http://forum.0xdbfb7.com/t/index-of-software/142/20 "2025-03-14T19:21:37Z")
Disk usage and administration WinDirStat. The zipped executable option is a nice portable no-install [Next page](http://forum.0xdbfb7.com/t/index-of-software/142.md?page=2)