I love a nice curated index. wiki’s list of PIC software. Curlie. awesome-* lists.
Here are software that I’ve come across in my travels, and my experiences.
Scientific data management / LIMS / reproducibility scripts
Sumatra
- [x] used
Signac
GitHub - glotzerlab/signac: Manage large and heterogeneous data spaces on the file system.
Writing
Scrivener
Proprietary win and OSX softwaer. Outliner
Manuskript
Presentations
Created with {Remark.js} using {Markdown} + {MathJax}
https://selipot.github.io/talks/lecture4.pdf need to try this out
LaTex Beamer
Git / GitHub
Saves one from having to git pull changes from remote. Helpful if you have a lot of repos to keep updated.
mr register each repo and then alias upd="cd && mr update && cd -"
spack
easybuild
lmod
mamba conda
Podcasts
VLC has some basic RSS podcast features.
GitHub - m3nu/upodder: simple console/terminal podcast downloader - basic batch downloader tool
Simulation ans numerical codes
X-ray
-
SRW
-
XMI-MSIM
-
msim
-
XRMC
-
Sim-xrf
Charged Particles
https://traceon.org/ - never used but looks interesting, thanks @Chrunchi
Kassiopeia - never used but looks interesting, thanks @manshiro
- SMILEI
go through programs/ folder
Project management / time management
Redmine
docs/redmine at master · docker-library/docs · GitHub
see demo
no batteries-included support for repeating tasks
Open source
Leantime.io
Lots of ways of tagging new tasks.
Slow AF user interface.
Notion
Apparently folks use this for task tracking. Powerful “paradigm” that I haven’t wrapped my head around properly yet. way beyond CRUD.