Index of software

I love a nice curated index. wiki’s list of PIC software. Curlie. awesome-* lists.

Here are software that I’ve come across in my travels, and my experiences.

Scientific data management / LIMS / reproducibility scripts

Sumatra

  • [x] used

Signac

GitHub - glotzerlab/signac: Manage large and heterogeneous data spaces on the file system.

Writing

Scrivener

Proprietary win and OSX softwaer. Outliner

Manuskript

Git / GitHub

Myrepos.

Saves one from having to git pull changes from remote. Helpful if you have a lot of repos to keep updated.

mr register each repo and then alias upd="cd && mr update && cd -"

spack
easybuild
lmod
mamba conda

Writing and editing

Staging ground

https://www.fluka.org/fluka.php?id=secured_introc

https://mesonbuild.com/

https://docs.wagtail.org/en/stable/

Working with HDF5

  • Vitables
  • PyMca
  • h5tree
  • h5view

Markdown

VMD npm install -g vmd

KDevelop Sublime Text Spyder

leo-editor

LeoInteg